PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00089847001
Common NameGSBRNA2T00089847001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Dof
Protein Properties Length: 178aa    MW: 19599.3 Da    PI: 9.8834
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00089847001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof121.53e-3861119260
               zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 
                          ++k+++cprC+s+ tkfCy+nny+++qPr+fCk+C+ryWt+GGalrnvPvG+grr++k 
  GSBRNA2T00089847001  61 PDKIIACPRCKSMATKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRRSKP 119
                          68999***************************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-2860118IPR003851Zinc finger, Dof-type
PfamPF027013.0E-3163118IPR003851Zinc finger, Dof-type
PROSITE profilePS5088427.91365119IPR003851Zinc finger, Dof-type
PROSITE patternPS01361067103IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MATKDSPGIK LFGKTITFNA NNNNIIQTIK KEEGQEQQPE LQTKIAVRSP SSSDLMAEKR  60
PDKIIACPRC KSMATKFCYF NNYNVNQPRH FCKGCQRYWT AGGALRNVPV GAGRRRSKPP  120
GRAGGFSELL GAATGAVDQV ELDALLVEEW RAGASHGVFR HDYSVKRLRC YTDGQSC*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.125250.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00089847001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013651530.11e-131PREDICTED: dof zinc finger protein DOF1.5-like
SwissprotP683501e-100DOF15_ARATH; Dof zinc finger protein DOF1.5
TrEMBLA0A078FS211e-132A0A078FS21_BRANA; BnaA07g08180D protein
STRINGBra010848.1-P1e-101(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28092669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29160.11e-91Dof family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]